Automatic control of bioprocesses, 2013. ,
Simultaneous optimization and solution methods for batch reactor control profiles, Computers & Chemical Engineering, vol.13, issue.1-2, pp.49-62, 1989. ,
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods, Nature Reviews Microbiology, vol.10, issue.4, p.291, 2012. ,
Bilevel optimization techniques in computational strain design, Computers & Chemical Engineering, vol.72, pp.363-372, 2015. ,
Bacterial growth rate reflects a bottleneck in resource allocation, Biochimica et Biophysica Acta (BBA)-General Subjects, vol.1810, issue.10, pp.978-988, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00753127
Cell design in bacteria as a convex optimization problem, Proceedings of the 48h IEEE Conference on Decision and Control (CDC) held jointly with 2009 28th Chinese Control Conference, pp.4517-4522, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00411513
Shifts in growth strategies reflect tradeoffs in cellular economics, Molecular Systems Biology, vol.5, 2009. ,
Interdependence of cell growth and gene expression: Origins and consequences, Science, vol.330, issue.6007, pp.1099-1102, 2010. ,
Cell design in bacteria as a convex optimization problem, Automatica, vol.47, issue.6, pp.1210-1218, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00411513
, Quantitative prediction of genome-wide resource allocation in bacteria, Metabolic engineering, vol.32, pp.232-243, 2015.
Optimal resource allocation enables mathematical exploration of microbial metabolic configurations, Journal of Mathematical Biology, vol.75, issue.6-7, pp.1349-1380, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01606441
Creation of a bacterial cell controlled by a chemically synthesized genome, Science, vol.329, issue.5987, pp.52-56, 2010. ,
CRISPR/cas9 in genome editing and beyond, Annual Review of Biochemistry, vol.85, issue.1, pp.227-264, 2016. ,
Independence of buoyant cell density and growth rate in escherichia coli, Journal of bacteriology, vol.158, issue.1, pp.296-299, 1984. ,
Growth rate of escherichia coli, Microbiological reviews, vol.55, issue.2, pp.316-333, 1991. ,
Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations, Molecular biology of the cell, vol.21, issue.1, pp.198-211, 2010. ,
Estimating optimal profiles of genetic alterations using constraint-based models, Biotechnology and bioengineering, vol.89, issue.2, pp.243-251, 2005. ,
Improving bioprocess productivity using constraint-based models in a dynamic optimization scheme, IFAC-PapersOnLine, vol.49, issue.26, pp.245-251, 2016. ,
, Optimization-theory and applications: problems with ordinary differential equations, ser. Application Mathematics, vol.17, 1984.
Foundations of Optimal Control Theory, 1967. ,
A survey of the maximum principles for optimal control problems with state constraints, SIAM review, vol.37, issue.2, pp.181-218, 1995. ,
The maximum principle for a differential inclusion problem, Analysis and Optimization of Systems, pp.517-531, 1984. ,
Optimal control, 2010. ,
URL : https://hal.archives-ouvertes.fr/inria-00629428
Nonlinear programming: concepts, algorithms, and applications to chemical processes, vol.10, 2010. ,
Bocop A collection of examples, INRIA, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-00726992
Growth-rate-dependent partitioning of RNA polymerases in bacteria, Proceedings of the National Academy of Sciences, vol.105, issue.51, 2008. ,
Dissecting specific and global transcriptional regulation of bacterial gene expression, Molecular systems biology, vol.9, issue.1, p.658, 2013. ,
Translation elicits a growth rate-dependent, genome-wide, differential protein production in bacillus subtilis, Molecular systems biology, vol.12, issue.5, p.870, 2016. ,